Way back (circa 1988ish timeframe) I remember a digital logic professor giving a little aside on the 8087 and remarking at the time that it (the 8087) used some three value logic circuits (or maybe four value logic). That instead of it being all binary, some parts used base 3 (or 4) to squeeze more onto the chip.
From your microscopic investigations, have you seen any evidence that any part of the chip uses anything other than base 2 logic?